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PRDM6-AS1 PRDM6 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105379152, updated on 10-Oct-2023

Summary

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Official Symbol
PRDM6-AS1provided by HGNC
Official Full Name
PRDM6 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55869
See related
AllianceGenome:HGNC:55869
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q23.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (123086231..123090316, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (123602744..123606808, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (122421926..122426011, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16272 Neighboring gene PPIC antisense RNA 1 Neighboring gene peptidylprolyl isomerase C Neighboring gene RNA, 7SL, cytoplasmic 711, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:122423586-122424130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:122424131-122424675 Neighboring gene PR/SET domain 6 Neighboring gene NANOG hESC enhancer GRCh37_chr5:122486848-122487353 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:122493602-122493821 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:122498660-122499160 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:122551508-122552100 Neighboring gene SUMO1 pseudogene 5 Neighboring gene centrosomal protein 120 Neighboring gene keratin 8 pseudogene 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC106786.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146771.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106786, AI424075, BF197710, BQ182159

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    123086231..123090316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    123602744..123606808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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