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LOC105379082 uncharacterized LOC105379082 [ Homo sapiens (human) ]

Gene ID: 105379082, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379082
Gene description
uncharacterized LOC105379082
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379082 in Genome Data Viewer
Location:
5q14.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (92553137..92688226, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (93037188..93172277, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (91888844..92023933, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 1264 Neighboring gene NANOG hESC enhancer GRCh37_chr5:91181280-91181781 Neighboring gene PCBP2 pseudogene 3 Neighboring gene VISTA enhancer hs1227 Neighboring gene VISTA enhancer hs682 Neighboring gene VISTA enhancer hs952 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:91494459-91495050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:91597975-91598486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:91598487-91598996 Neighboring gene uncharacterized LOC105379080 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:91896397-91897053 Neighboring gene VISTA enhancer hs1577 Neighboring gene VISTA enhancer hs1109 Neighboring gene VISTA enhancer hs971 Neighboring gene VISTA enhancer hs1039 Neighboring gene VISTA enhancer hs1079 Neighboring gene Sharpr-MPRA regulatory region 14810 Neighboring gene VISTA enhancer hs1153 Neighboring gene lactate dehydrogenase B pseudogene 3 Neighboring gene chaperonin containing TCP1 subunit 7 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • CTC-458G6.2
  • CTC-529L17.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188296.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026780, AC124854

  2. NR_188297.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026780, AC124854

  3. NR_188298.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026780, AC124854

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    92553137..92688226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    93037188..93172277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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