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LINC02122 long intergenic non-protein coding RNA 2122 [ Homo sapiens (human) ]

Gene ID: 105379036, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02122provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2122provided by HGNC
Primary source
HGNC:HGNC:52979
See related
AllianceGenome:HGNC:52979
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02122 in Genome Data Viewer
Location:
5q13.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (74034263..74103128, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (74515565..74584425, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 28 Neighboring gene RNA, U7 small nuclear 196 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:73175472-73175972 Neighboring gene uncharacterized LOC105379034 Neighboring gene Sharpr-MPRA regulatory region 15608 Neighboring gene uncharacterized LOC124901003 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:73330922-73332121 Neighboring gene uncharacterized LOC105379035 Neighboring gene MPRA-validated peak5281 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:73365677-73366177 Neighboring gene MPRA-validated peak5282 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22663 Neighboring gene MPRA-validated peak5287 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22664 Neighboring gene NANOG hESC enhancer GRCh37_chr5:73562459-73562961 Neighboring gene uncharacterized LOC124901004 Neighboring gene long intergenic non-protein coding RNA 1335

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183289.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026796, AC091899

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    74034263..74103128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    74515565..74584425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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