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LINC02230 long intergenic non-protein coding RNA 2230 [ Homo sapiens (human) ]

Gene ID: 105379033, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02230provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2230provided by HGNC
Primary source
HGNC:HGNC:53099
See related
AllianceGenome:HGNC:53099
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q13.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (73337906..73338765)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (73819216..73820075)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (72633733..72634592)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC340090 Neighboring gene uncharacterized LOC124901002 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72525833-72526458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72528715-72529663 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:72542107-72542607 Neighboring gene uncharacterized LOC105379031 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:72584413-72585257 Neighboring gene NANOG hESC enhancer GRCh37_chr5:72586501-72587002 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:72617235-72618434 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:72665955-72667154 Neighboring gene uncharacterized LOC107986383 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:72731449-72732352 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:72739450-72740353 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:72740354-72741256 Neighboring gene forkhead box D1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146627.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093302, AW086201

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    73337906..73338765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    73819216..73820075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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