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ERCC8-AS1 ERCC8 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105378991, updated on 10-Oct-2023

Summary

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Official Symbol
ERCC8-AS1provided by HGNC
Official Full Name
ERCC8 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40220
See related
AllianceGenome:HGNC:40220
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.9), thyroid (RPKM 1.5) and 24 other tissues See more
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Genomic context

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Location:
5q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (60917189..60919573)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (61733572..61735956)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr5:60065221-60065722 Neighboring gene ELOVL fatty acid elongase 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16039 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16040 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16041 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16042 Neighboring gene ERCC excision repair 8, CSA ubiquitin ligase complex subunit Neighboring gene G protein nucleolar 3 like pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22588 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:60457462-60458358 Neighboring gene SMIM15 antisense RNA 1 Neighboring gene small integral membrane protein 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC104113.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183288.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022445

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    60917189..60919573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    61733572..61735956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases