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LINC01357 long intergenic non-protein coding RNA 1357 [ Homo sapiens (human) ]

Gene ID: 105378912, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01357provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1357provided by HGNC
Primary source
HGNC:HGNC:50588
See related
Ensembl:ENSG00000226419 AllianceGenome:HGNC:50588
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HP08777
Expression
Biased expression in placenta (RPKM 2.6), testis (RPKM 2.1) and 13 other tissues See more
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Genomic context

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See LINC01357 in Genome Data Viewer
Location:
1p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (112849857..112877871)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (112862413..112890427)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (113392479..113420493)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1205 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:113266466-113266670 Neighboring gene TAFA chemokine like family member 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113301747-113302645 Neighboring gene nuclear transport factor 2 pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113305483-113306110 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:113334060-113334634 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113334635-113335207 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:113345268-113345768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:113345769-113346269 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1206 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113351775-113352296 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:113360077-113360808 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113360809-113361538 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113363733-113364462 Neighboring gene long intergenic non-protein coding RNA 1356 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113385908-113386857 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113388166-113388800 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113388801-113389435 Neighboring gene uncharacterized LOC105378911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113407421-113407930 Neighboring gene MPRA-validated peak371 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:113408443-113408952 Neighboring gene Sharpr-MPRA regulatory region 5001 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:113420877-113421474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113423468-113424388 Neighboring gene microRNA 11399 Neighboring gene ribosomal protein L39 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. Oshikawa M, et al. Invest Ophthalmol Vis Sci, 2011 Aug 22. PMID 21697133

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • hypothetical protein HP08777

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189281.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390729
    Related
    ENST00000715664.2

  2. NR_189282.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390729

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    112849857..112877871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    112862413..112890427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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