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PPM1J-DT PPM1J divergent transcript [ Homo sapiens (human) ]

Gene ID: 105378910, updated on 10-Oct-2023

Summary

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Official Symbol
PPM1J-DTprovided by HGNC
Official Full Name
PPM1J divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55355
See related
AllianceGenome:HGNC:55355
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.9) See more
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Genomic context

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Location:
1p13.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (112715611..112717796)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (112727942..112730347)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113242906-113243833 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:113246858-113247412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1517 Neighboring gene ras homolog family member C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1203 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1518 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1J Neighboring gene Sharpr-MPRA regulatory region 11832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1205 Neighboring gene TAFA chemokine like family member 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:113266466-113266670 Neighboring gene nuclear transport factor 2 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    112715611..112717796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947713.4 RNA Sequence

  2. XR_947714.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    112727942..112730347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070540.1 RNA Sequence

  2. XR_007070541.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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