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LOC105378823 uncharacterized LOC105378823 [ Homo sapiens (human) ]

Gene ID: 105378823, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378823
Gene description
uncharacterized LOC105378823
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (85717715..85727521)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (85558558..85568371)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268231 Neighboring gene uncharacterized LOC107985057 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9316 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:86157154-86157654 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:86157655-86158155 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:86173373-86174206 Neighboring gene zinc finger HIT-type containing 6 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:86174207-86175039 Neighboring gene collagen type XXIV alpha 1 chain Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9389 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:86362341-86362840 Neighboring gene RNA, 5S ribosomal pseudogene 51 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1273 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1274 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1275 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:86570381-86570882 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9432 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9445 Neighboring gene long intergenic non-protein coding RNA 2795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    85717715..85727521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947550.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    85558558..85568371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070393.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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