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LOC105378819 uncharacterized LOC105378819 [ Homo sapiens (human) ]

Gene ID: 105378819, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378819
Gene description
uncharacterized LOC105378819
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378819 in Genome Data Viewer
Location:
1p22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (84578016..84583618)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (84418390..84423992)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ribosome production factor 1 homolog Neighboring gene NANOG hESC enhancer GRCh37_chr1:84969365-84969870 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1019 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1020 Neighboring gene G protein subunit gamma 5 Neighboring gene spermatogenesis associated 1 Neighboring gene chitobiase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1021 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:85044029-85044228 Neighboring gene long intergenic non-protein coding RNA 1461 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1022 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1023 Neighboring gene uncharacterized LOC124904206 Neighboring gene long intergenic non-protein coding RNA 1555

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    84578016..84583618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947544.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    84418390..84423992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070387.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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