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LOC105378789 uncharacterized LOC105378789 [ Homo sapiens (human) ]

Gene ID: 105378789, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378789
Gene description
uncharacterized LOC105378789
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378789 in Genome Data Viewer
Location:
1p31.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (69452901..69565850)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (69330157..69442558)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378787 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:69709807-69710471 Neighboring gene long intergenic non-protein coding RNA 2791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:69777582-69778086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:69778087-69778590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:69875655-69876154 Neighboring gene long intergenic non-protein coding RNA 1758 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 987 Neighboring gene leucine rich repeat containing 7 Neighboring gene shugoshin 1 pseudogene 1 Neighboring gene uncharacterized LOC124904199

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    69452901..69565850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738106.2 RNA Sequence

  2. XR_947488.3 RNA Sequence

  3. XR_007066166.1 RNA Sequence

  4. XR_007066165.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    69330157..69442558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070329.1 RNA Sequence

  2. XR_007070330.1 RNA Sequence

  3. XR_007070332.1 RNA Sequence

  4. XR_007070331.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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