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LOC105378774 uncharacterized LOC105378774 [ Homo sapiens (human) ]

Gene ID: 105378774, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378774
Gene description
uncharacterized LOC105378774
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p31.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (64369685..64383571)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (64245546..64259466)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:64661738-64662238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:64662239-64662739 Neighboring gene ubiquitin conjugating enzyme E2 U Neighboring gene Sharpr-MPRA regulatory region 11272 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:64728314-64729513 Neighboring gene NANOG hESC enhancer GRCh37_chr1:64815627-64816202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:64824433-64824932 Neighboring gene U7 small nuclear RNA Neighboring gene RNA, U7 small nuclear 62 pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:64868467-64869666 Neighboring gene uncharacterized LOC107984966

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    64369685..64383571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947460.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    64245546..64259466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070301.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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