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LINC02777 long intergenic non-protein coding RNA 2777 [ Homo sapiens (human) ]

Gene ID: 105378753, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02777provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2777provided by HGNC
Primary source
HGNC:HGNC:54297
See related
Ensembl:ENSG00000232453 AllianceGenome:HGNC:54297
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p32.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (58882878..58904138, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (58761324..58782581, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene JUN divergent transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59279600-59280596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59280597-59281592 Neighboring gene uncharacterized LOC101926907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 936 Neighboring gene uncharacterized LOC107984961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1093 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:59348667-59349866 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:59351096-59351291 Neighboring gene Sharpr-MPRA regulatory region 10312 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 937 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59387615-59388116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59388117-59388616 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1094 Neighboring gene NANOG hESC enhancer GRCh37_chr1:59446941-59447485 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:59448521-59449021 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:59448020-59448520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1096 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1100 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1102 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1103 Neighboring gene PHB1 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1104 Neighboring gene long intergenic non-protein coding RNA 1358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1105 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1106 Neighboring gene VISTA enhancer hs1485 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59542215-59542758 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59543303-59543846 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:59543847-59544388

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183655.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105277

  2. NR_183656.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105277

  3. NR_183657.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105277
    Related
    ENST00000423408.6

  4. NR_183658.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105277
    Related
    ENST00000660449.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    58882878..58904138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    58761324..58782581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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