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LOC105378751 uncharacterized LOC105378751 [ Homo sapiens (human) ]

Gene ID: 105378751, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378751
Gene description
uncharacterized LOC105378751
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378751 in Genome Data Viewer
Location:
1p32.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (58761013..58770708)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (58639457..58649154)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Myb like, SWIRM and MPN domains 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1087 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:59169902-59170744 Neighboring gene uncharacterized LOC112268263 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:59192522-59193721 Neighboring gene uncharacterized LOC124904191 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:59215043-59215253 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:59220674-59221873 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1088 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1089 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:59247516-59247691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1090 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 934 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:59249417-59250164 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:59250165-59250910 Neighboring gene Sharpr-MPRA regulatory region 1716 Neighboring gene JUN divergent transcript Neighboring gene Jun proto-oncogene, AP-1 transcription factor subunit Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59279600-59280596 Neighboring gene uncharacterized LOC101926907 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59280597-59281592

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    58761013..58770708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066137.1 RNA Sequence

  2. XR_007066136.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    58639457..58649154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070266.1 RNA Sequence

  2. XR_007070265.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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