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MIR3659HG MIR3659 host gene [ Homo sapiens (human) ]

Gene ID: 105378653, updated on 10-Oct-2023

Summary

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Official Symbol
MIR3659HGprovided by HGNC
Official Full Name
MIR3659 host geneprovided by HGNC
Primary source
HGNC:HGNC:54306
See related
AllianceGenome:HGNC:54306
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 6.9) and prostate (RPKM 0.2) See more
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Genomic context

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See MIR3659HG in Genome Data Viewer
Location:
1p34.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38047134..38119530)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (37914312..37986726)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38512806..38585202)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:38491775-38492274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38492441-38492993 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38492994-38493545 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 784 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 785 Neighboring gene Sharpr-MPRA regulatory region 3132 Neighboring gene UTP11 small subunit processome component Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38512768-38513268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38513269-38513769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 687 Neighboring gene POU class 3 homeobox 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38537009-38537508 Neighboring gene VISTA enhancer hs238 Neighboring gene microRNA 3659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38579645-38580510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38581621-38582121 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38582797-38583340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38583341-38583883 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38590116-38590297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38594298-38594798 Neighboring gene long intergenic non-protein coding RNA 2786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38605789-38606702 Neighboring gene uncharacterized LOC105378654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38671184-38671684 Neighboring gene long intergenic non-protein coding RNA 1343

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168386.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139158

  2. NR_168387.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139158

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    38047134..38119530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    37914312..37986726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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