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LINC01778 long intergenic non-protein coding RNA 1778 [ Homo sapiens (human) ]

Gene ID: 105378622, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01778provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1778provided by HGNC
Primary source
HGNC:HGNC:52568
See related
Ensembl:ENSG00000223382 AllianceGenome:HGNC:52568
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in adrenal (RPKM 1.2), fat (RPKM 0.3) and 11 other tissues See more
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Genomic context

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See LINC01778 in Genome Data Viewer
Location:
1p35.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (30824652..30834284)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (30676975..30686619)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (31297499..31307131)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene lysosomal protein transmembrane 5 Neighboring gene uncharacterized LOC105378620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 618 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 621 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 625 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31223351-31223894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31223895-31224436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 629 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31229428-31230224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 631 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 632 Neighboring gene Sharpr-MPRA regulatory region 12480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31246183-31246683 Neighboring gene uncharacterized LOC105378621 Neighboring gene CRISPRi-validated cis-regulatory element chr1.4289 Neighboring gene CRISPRi-validated cis-regulatory element chr1.4291 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31260718-31261230 Neighboring gene Sharpr-MPRA regulatory region 4114 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:31277163-31277830 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:31277831-31278496 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:31282779-31283279 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31291425-31291931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31296724-31297226 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31317155-31317674 Neighboring gene Sharpr-MPRA regulatory region 1191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31320286-31321089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31322620-31323120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31323121-31323621 Neighboring gene RN7SK pseudogene 91 Neighboring gene Sharpr-MPRA regulatory region 1173 Neighboring gene uncharacterized LOC400748

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146732.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI869071, AL137027, AL445235, BX113853
    Related
    ENST00000634587.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    30824652..30834284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    30676975..30686619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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