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LOC105378617 uncharacterized LOC105378617 [ Homo sapiens (human) ]

Gene ID: 105378617, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378617
Gene description
uncharacterized LOC105378617
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378617 in Genome Data Viewer
Location:
1p35.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (30162973..30199955, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (30006306..30043240, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984934 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:30108561-30108764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30162197-30162696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30179358-30179858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30179859-30180359 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:30182040-30183239 Neighboring gene MPRA-validated peak146 silencer Neighboring gene MPRA-validated peak147 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30257435-30257936 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30272801-30273302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30283373-30284343 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:30296971-30297175 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30297771-30298270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30317999-30318500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30318501-30319000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30328550-30329222 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30329223-30329894 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:30331015-30331514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:30394348-30395242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30399701-30400346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30403757-30404338 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30406301-30407056 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:30446776-30447975 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30454325-30454982 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:30481435-30481935 Neighboring gene Sharpr-MPRA regulatory region 9119 Neighboring gene long intergenic non-protein coding RNA 1648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30579535-30580036 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:30626667-30627480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30663183-30663713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30667220-30667720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30702893-30703546 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6631 Neighboring gene uncharacterized LOC105378618 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30730647-30731414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30805338-30806023 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30815051-30815718 Neighboring gene MPRA-validated peak152 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30885131-30885632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30885633-30886132 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:31000145-31001344 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6672 Neighboring gene MPRA-validated peak154 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6678 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:31090817-31092016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31114430-31114930 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31122410-31123100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31134880-31135811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31136257-31136758 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31180709-31181209 Neighboring gene uncharacterized LOC124903888

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    30162973..30199955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737960.1 RNA Sequence

  2. XR_001737959.1 RNA Sequence

  3. XR_947128.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    30006306..30043240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071282.1 RNA Sequence

  2. XR_007071280.1 RNA Sequence

  3. XR_007071281.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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