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LOC105378542 uncharacterized LOC105378542 [ Homo sapiens (human) ]

Gene ID: 105378542, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378542
Gene description
uncharacterized LOC105378542
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378542 in Genome Data Viewer
Location:
10q26.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (125263097..125275272)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (126144247..126156422)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S21 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126881561-126882062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4192 Neighboring gene VISTA enhancer hs330 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:126915977-126917176 Neighboring gene uncharacterized LOC105378541 Neighboring gene NANOG hESC enhancer GRCh37_chr10:126918015-126918529 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:126919634-126920833 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:126951644-126952843 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126955079-126955580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126955581-126956080 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:127093046-127094245 Neighboring gene MPRA-validated peak1126 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr10:127107802-127108051 Neighboring gene uncharacterized LOC105378543 Neighboring gene Sharpr-MPRA regulatory region 15007 Neighboring gene uncharacterized LOC124902521 Neighboring gene ribosomal protein S27 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    125263097..125275272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946435.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    126144247..126156422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081041.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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Research Materials