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LOC105378541 uncharacterized LOC105378541 [ Homo sapiens (human) ]

Gene ID: 105378541, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105378541
Gene description
uncharacterized LOC105378541
See related
Ensembl:ENSG00000305153
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378541 in Genome Data Viewer
Location:
10q26.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (125228517..125234036)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (126109094..126115203)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene C-terminal binding protein 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:126729801-126730300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126736559-126737142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126740341-126741097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126746343-126747091 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126747092-126747839 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:126750177-126750378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126751552-126752149 Neighboring gene microRNA 4296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126767335-126767836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126770120-126770948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126770949-126771776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126773433-126774260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126775917-126776743 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126791223-126792047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126795355-126795874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126801041-126801540 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126805494-126806319 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126824413-126825010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126826210-126826808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126826809-126827407 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2923 Neighboring gene Sharpr-MPRA regulatory region 360 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:126840048-126841009 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:126849903-126850512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126881561-126882062 Neighboring gene mitochondrial ribosomal protein S21 pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4192 Neighboring gene VISTA enhancer hs330 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:126915977-126917176 Neighboring gene NANOG hESC enhancer GRCh37_chr10:126918015-126918529 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:126919634-126920833 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:126951644-126952843 Neighboring gene uncharacterized LOC105378542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126955079-126955580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126955581-126956080 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:127093046-127094245 Neighboring gene MPRA-validated peak1126 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr10:127107802-127108051 Neighboring gene uncharacterized LOC105378543 Neighboring gene Sharpr-MPRA regulatory region 15007 Neighboring gene ribosomal protein S27 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    125228517..125234036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062330.1 RNA Sequence

  2. XR_946434.3 RNA Sequence

    Related
    ENST00000809088.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    126109094..126115203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081039.1 RNA Sequence

  2. XR_007081040.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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