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LOC105378480 uncharacterized LOC105378480 [ Homo sapiens (human) ]

Gene ID: 105378480, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378480
Gene description
uncharacterized LOC105378480
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378480 in Genome Data Viewer
Location:
10q25.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (110212868..110221927, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (111104610..111105802, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378479 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:111910896-111911890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:111911891-111912883 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:111924423-111924922 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:111928634-111929601 Neighboring gene Sharpr-MPRA regulatory region 9707 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:111933901-111934496 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:111965444-111965944 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2807 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:111969909-111970887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4005 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2810 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4007 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2812 Neighboring gene MAX interactor 1, dimerization protein Neighboring gene NANOG hESC enhancer GRCh37_chr10:112045143-112045644 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2813 Neighboring gene survival motor neuron domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4010 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:112116377-112117576 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4017 Neighboring gene Sharpr-MPRA regulatory region 10815 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:112169725-112170924 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:112174002-112175201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112177315-112177815 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2814 Neighboring gene uncharacterized LOC105378482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4020 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4021 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:112190742-112191347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4022

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    110212868..110221927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946315.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    111104610..111105802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080857.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials