U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02661 long intergenic non-protein coding RNA 2661 [ Homo sapiens (human) ]

Gene ID: 105378478, updated on 26-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02661provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2661provided by HGNC
Primary source
HGNC:HGNC:54147
See related
Ensembl:ENSG00000223381 AllianceGenome:HGNC:54147
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
10q25.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (108708539..108840686)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (109597265..109730527)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2803 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:110074996-110075594 Neighboring gene NANOG hESC enhancer GRCh37_chr10:110083009-110083537 Neighboring gene prostaglandin E synthase 3 pseudogene 5 Neighboring gene uncharacterized LOC105378477 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:110225477-110225978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:110225979-110226478 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:110358260-110359459 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:110357598-110358137 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9735 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9749 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9758 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9792 Neighboring gene MAPKAPK5 pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9822 Neighboring gene RN7SK pseudogene 278

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187538.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356476
    Related
    ENST00000653086.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    108708539..108840686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    109597265..109730527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases