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LOC105378399 uncharacterized LOC105378399 [ Homo sapiens (human) ]

Gene ID: 105378399, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378399
Gene description
uncharacterized LOC105378399
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378399 in Genome Data Viewer
Location:
10q23.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (83971590..84003481, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (84849784..84881612, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984181 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:85691876-85692426 Neighboring gene uncharacterized LOC105378398 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:85716832-85717790 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:85743139-85744338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3673 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17591 Neighboring gene RNA, U1 small nuclear 65, pseudogene Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 8 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:85898633-85899202 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:85899203-85899772 Neighboring gene growth hormone inducible transmembrane protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    83971590..84003481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946148.2 RNA Sequence

  2. XR_946149.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    84849784..84881612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080970.1 RNA Sequence

  2. XR_007080971.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials