U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105378307 uncharacterized LOC105378307 [ Homo sapiens (human) ]

Gene ID: 105378307, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105378307
Gene description
uncharacterized LOC105378307
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105378307 in Genome Data Viewer
Location:
10q21.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (52782141..52810965, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (53629119..53657944, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902426 Neighboring gene uncharacterized LOC105378305 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54421868-54422425 Neighboring gene uncharacterized LOC105378306 Neighboring gene mannose binding lectin 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:54624105-54624866 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:54643985-54644699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3377 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54663149-54663915 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54683191-54683917 Neighboring gene uncharacterized LOC105378308 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:54724279-54724804 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:54725855-54726379 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54727777-54728312 Neighboring gene long intergenic non-protein coding RNA 2672 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:54789467-54789966

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    52782141..52810965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_945965.3 RNA Sequence

  2. XR_945966.3 RNA Sequence

  3. XR_001747451.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    53629119..53657944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081427.1 RNA Sequence

  2. XR_007081426.1 RNA Sequence

  3. XR_007081428.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials