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LOC105378224 uncharacterized LOC105378224 [ Homo sapiens (human) ]

Gene ID: 105378224, updated on 27-Aug-2024

Summary

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Gene symbol
LOC105378224
Gene description
uncharacterized LOC105378224
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (149703117..149721351)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (150239674..150257905)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901104 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23383 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23384 Neighboring gene small nucleolar RNA U3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:149092310-149092945 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:149095860-149096110 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:149109472-149110122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23386 Neighboring gene RNA, 7SL, cytoplasmic 868, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16500 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16501 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16502 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16503 Neighboring gene PPARG coactivator 1 beta Neighboring gene microRNA 378a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    149703117..149721351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_944405.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    150239674..150257905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076009.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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