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LOC105378146 uncharacterized LOC105378146 [ Homo sapiens (human) ]

Gene ID: 105378146, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378146
Gene description
uncharacterized LOC105378146
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 9.9) See more
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Genomic context

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Location:
6q27
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (168927741..168964382, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170276893..170315660, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (169327836..169364477, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986550 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:169156090-169156594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169183401-169184285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169184286-169185169 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169194256-169195455 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169239888-169240466 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169240467-169241046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169241047-169241624 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:169241587-169241730 Neighboring gene uncharacterized LOC105378144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267872-169268474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267268-169267871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169350566-169351070 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169362660-169363859 Neighboring gene uncharacterized LOC105378145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:169379249-169379891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169400447-169400946 Neighboring gene NANOG hESC enhancer GRCh37_chr6:169406890-169407416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169418104-169418720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169418721-169419336 Neighboring gene uncharacterized LOC101929460 Neighboring gene uncharacterized LOC102724357

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136248.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109924

  2. NR_136249.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109924

  3. NR_136250.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109924, AL513210

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    168927741..168964382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_004166862.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    154861..162052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068741.1 RNA Sequence

  2. XR_001756530.3 RNA Sequence

  3. XR_001756529.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    170276893..170315660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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