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LOC105378127 uncharacterized LOC105378127 [ Homo sapiens (human) ]

Gene ID: 105378127, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378127
Gene description
uncharacterized LOC105378127
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378127 in Genome Data Viewer
Location:
6q27
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167459258..167472790, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (168842546..168856080, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (167871475..167885013, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene t-complex 10 like 3 (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167813964-167814643 Neighboring gene Sharpr-MPRA regulatory region 8873 Neighboring gene Sharpr-MPRA regulatory region 3778 Neighboring gene uncharacterized LOC105378126 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167854012-167854880 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167854881-167855750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167886934-167887447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167891559-167892172 Neighboring gene MPRA-validated peak6318 silencer Neighboring gene uncharacterized LOC105378128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167905065-167905972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167918438-167919346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167919347-167920254 Neighboring gene uncharacterized LOC107986546

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134591.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FP885873, FP928997

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    167459258..167472790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    168842546..168856080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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