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LOC105378123 uncharacterized LOC105378123 [ Homo sapiens (human) ]

Gene ID: 105378123, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378123
Gene description
uncharacterized LOC105378123
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q27
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167165349..167169980, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (168548016..168552643, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (167578837..167583468, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene C-C motif chemokine receptor 6 Neighboring gene uncharacterized LOC112267970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167556216-167557144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167557145-167558073 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167576665-167577653 Neighboring gene G protein-coupled receptor 31 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:167578457-167579656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167585168-167585668 Neighboring gene t-complex 10 like 2 (pseudogene) Neighboring gene uncharacterized LOC124901462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167619037-167619536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167620021-167620522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167620523-167621022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167621902-167622418 Neighboring gene unc-93 homolog A (C. elegans) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134592.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW197114, BX109291

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    167165349..167169980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    168548016..168552643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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