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MEAT6 melanoma-associated transcript 6 [ Homo sapiens (human) ]

Gene ID: 105378111, updated on 10-Oct-2023

Summary

Gene symbol
MEAT6
Gene description
melanoma-associated transcript 6
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
6q27
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (164793377..164822063, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (166159304..166187980, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (165206866..165235552, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379712 Neighboring gene uncharacterized LOC107986667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25426 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:165129011-165129555 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91179 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91213 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91215 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:165591001-165592200 Neighboring gene uncharacterized LOC124901500 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:165708186-165708356 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:165711405-165712604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:165714707-165715207 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:165722813-165723312 Neighboring gene chromosome 6 open reading frame 118

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DA145490, DB463680, FO681540

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    164793377..164822063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    166159304..166187980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)