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LINC02840 long intergenic non-protein coding RNA 2840 [ Homo sapiens (human) ]

Gene ID: 105378065, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02840provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2840provided by HGNC
Primary source
HGNC:HGNC:54374
See related
Ensembl:ENSG00000224893 AllianceGenome:HGNC:54374
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02840 in Genome Data Viewer
Location:
6q25.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (152754876..152875997, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (153956197..154077312, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (153076011..153197132, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378061 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:153042324-153043523 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 16 Neighboring gene MYC target 1 Neighboring gene vasoactive intestinal peptide Neighboring gene uncharacterized LOC124901440 Neighboring gene uncharacterized LOC124901439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25290 Neighboring gene TUBB4B pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:153235625-153236126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:153236127-153236626 Neighboring gene C11orf98 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183502.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL160162
    Related
    ENST00000658966.1

  2. NR_183503.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL160162
    Related
    ENST00000671138.1

  3. NR_183504.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL133356, AL160162

  4. NR_183505.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL133356, AL160162
    Related
    ENST00000666093.1

  5. NR_183506.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL160162
    Related
    ENST00000667732.1

  6. NR_183507.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL133356, AL160162

  7. NR_183508.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133269, AL133356, AL160162

  8. NR_183509.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133356, AL160162

  9. NR_183510.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133356, AL160162

  10. NR_183511.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL160162

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    152754876..152875997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    153956197..154077312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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