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TAB2-AS1 TAB2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105378049, updated on 10-Oct-2023

Summary

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Official Symbol
TAB2-AS1provided by HGNC
Official Full Name
TAB2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53508
See related
Ensembl:ENSG00000225924 AllianceGenome:HGNC:53508
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q25.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149243283..149257551, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (150443094..150457392, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (149564419..149578687, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25246 Neighboring gene Sharpr-MPRA regulatory region 12512 Neighboring gene small nuclear ribonucleoprotein polypeptide B2 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17656 Neighboring gene uncharacterized LOC124901426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25247 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25250 Neighboring gene MPRA-validated peak6208 silencer Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 2 Neighboring gene MPRA-validated peak6209 silencer Neighboring gene MPRA-validated peak6210 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25251 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17657 Neighboring gene RNA, 7SL, cytoplasmic 234, pseudogene Neighboring gene fatty acid binding protein 12 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149096.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031056, HY041238, HY227801
    Related
    ENST00000424421.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    149243283..149257551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    150443094..150457392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases