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LINC02527 long intergenic non-protein coding RNA 2527 [ Homo sapiens (human) ]

Gene ID: 105377946, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02527provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2527provided by HGNC
Primary source
HGNC:HGNC:53553
See related
AllianceGenome:HGNC:53553
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (111900305..111909397, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (113083390..113092482, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (112221508..112230600, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377945 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24951 Neighboring gene FYN proto-oncogene, Src family tyrosine kinase Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:112051720-112052606 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:112052607-112053491 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24952 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112072171-112072743 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:112085712-112086288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17480 Neighboring gene Sharpr-MPRA regulatory region 12906 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24953 Neighboring gene Sharpr-MPRA regulatory region 9187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24957 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17481 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:112194227-112194726 Neighboring gene uncharacterized LOC102724646 Neighboring gene NANOG hESC enhancer GRCh37_chr6:112205254-112205757 Neighboring gene NANOG hESC enhancer GRCh37_chr6:112210097-112211042 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:112229311-112229997 Neighboring gene uncharacterized LOC105377947 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24958 Neighboring gene Sharpr-MPRA regulatory region 11311 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17484 Neighboring gene cellular communication network factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Linc02527 promoted autophagy in Intrahepatic cholestasis of pregnancy. Hu J, et al. Cell Death Dis, 2018 Sep 24. PMID 30250023, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149099.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158035

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    111900305..111909397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    113083390..113092482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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