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LINC02836 long intergenic non-protein coding RNA 2836 [ Homo sapiens (human) ]

Gene ID: 105377922, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02836provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2836provided by HGNC
Primary source
HGNC:HGNC:54370
See related
AllianceGenome:HGNC:54370
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02836 in Genome Data Viewer
Location:
6q21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (105612511..105632329, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (106788277..106808100, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene prolyl endopeptidase Neighboring gene ribosomal protein L35 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24868 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:105845775-105846537 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24869 Neighboring gene uncharacterized LOC105377921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24871 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24872 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:105969750-105970949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24873 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:106048698-106049897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24875 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24876 Neighboring gene chromatin assembly factor 1 subunit B pseudogene Neighboring gene Sharpr-MPRA regulatory region 12173 Neighboring gene MPRA-validated peak5996 silencer Neighboring gene MPRA-validated peak5997 silencer Neighboring gene uncharacterized LOC105377923 Neighboring gene MPRA-validated peak5998 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr6:106300905-106301406 Neighboring gene NANOG hESC enhancer GRCh37_chr6:106317699-106318200 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:106332509-106333708

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    105612511..105632329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_942833.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    106788277..106808100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077007.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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