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LOC105377899 uncharacterized LOC105377899 [ Homo sapiens (human) ]

Gene ID: 105377899, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377899
Gene description
uncharacterized LOC105377899
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377899 in Genome Data Viewer
Location:
6q16.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (93446417..93645161)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (94658392..94858731)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr6:93833219-93833931 Neighboring gene COP9 signalosome subunit 5 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:93881681-93882492 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:93908284-93908784 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97174 Neighboring gene EPH receptor A7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17402 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17403 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:94346522-94347093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:94347094-94347664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:94373923-94374424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:94374425-94374924 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:94495986-94496512 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:94496513-94497037 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:94497038-94497563 Neighboring gene uncharacterized LOC124901496 Neighboring gene tumor suppressor TSG1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    93446417..93645161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744262.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    94658392..94858731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077451.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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