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TRIM7-AS2 TRIM7 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 105377769, updated on 10-Oct-2023

Summary

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Official Symbol
TRIM7-AS2provided by HGNC
Official Full Name
TRIM7 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:56031
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in skin (RPKM 4.4), testis (RPKM 4.0) and 18 other tissues See more
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Genomic context

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See TRIM7-AS2 in Genome Data Viewer
Location:
5q35.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181191890..181196881)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181751926..181756917)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23781 Neighboring gene tRNA-Pro (anticodon TGG) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16784 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23782 Neighboring gene long intergenic non-protein coding RNA 1962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16786 Neighboring gene tRNA-Thr (anticodon TGT) 6-1 Neighboring gene tripartite motif containing 7 Neighboring gene TRIM7 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 12726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16787 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16788 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16790 Neighboring gene tRNA-Ala (anticodon TGC) 3-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTC-338M12.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183280.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008443

  2. NR_183281.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008443

  3. NR_183282.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008443

  4. NR_183283.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008443

  5. NR_183284.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008443

  6. NR_183285.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008443

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181191890..181196881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181751926..181756917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases