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LINC02222 long intergenic non-protein coding RNA 2222 [ Homo sapiens (human) ]

Gene ID: 105377765, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02222provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2222provided by HGNC
Primary source
HGNC:HGNC:53091
See related
AllianceGenome:HGNC:53091
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.6) See more
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Genomic context

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See LINC02222 in Genome Data Viewer
Location:
5q35.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (180684096..180686543)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181240789..181243237)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180111096..180113543)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180029578-180030078 Neighboring gene fms related receptor tyrosine kinase 4 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:180046831-180048030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180059019-180059648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180059649-180060278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180066955-180067601 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:180069214-180069370 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180072499-180073164 Neighboring gene coiled-coil domain containing 86 pseudogene Neighboring gene olfactory receptor family 2 subfamily AI member 1 pseudogene Neighboring gene RNA, U1 small nuclear 17, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146728.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122714, AI024544, DB087839

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    180684096..180686543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181240789..181243237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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