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LINC03000 long intergenic non-protein coding RNA 3000 [ Homo sapiens (human) ]

Gene ID: 105377703, updated on 10-Oct-2023

Summary

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Official Symbol
LINC03000provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3000provided by HGNC
Primary source
HGNC:HGNC:56116
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q34
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (164296705..165061734)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (164830392..165596810)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 709 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:163319797-163320352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23583 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:163342579-163343125 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16592 Neighboring gene LSM1 homolog, mRNA degradation associated pseudogene 2 Neighboring gene MPRA-validated peak5565 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:163546314-163547513 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:163559545-163559889 Neighboring gene NANOG hESC enhancer GRCh37_chr5:163611210-163611711 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:163616370-163616914 Neighboring gene MPRA-validated peak5567 silencer Neighboring gene MPRA-validated peak5568 silencer Neighboring gene uncharacterized LOC102546299 Neighboring gene long intergenic non-protein coding RNA 2143 Neighboring gene ribosomal protein S15 pseudogene 6 Neighboring gene RNA, U6 small nuclear 209, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:164562237-164562771 Neighboring gene uncharacterized LOC105377702 Neighboring gene long intergenic non-protein coding RNA 1938

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTC-340A15.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    164296705..165061734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742489.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    164830392..165596810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076082.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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