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USP34-DT USP34 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105377633, updated on 26-Oct-2023

Summary

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Official Symbol
USP34-DTprovided by HGNC
Official Full Name
USP34 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55262
See related
Ensembl:ENSG00000270820 AllianceGenome:HGNC:55262
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.4), fat (RPKM 0.9) and 23 other tissues See more
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Genomic context

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Location:
2p15
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (61471096..61483941)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (61476934..61490077)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 34 Neighboring gene BNIP3 pseudogene 45 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:61504619-61505818 Neighboring gene NANOG hESC enhancer GRCh37_chr2:61607882-61608383 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:61644005-61644197 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:61652307-61652984 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:61652985-61653662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:61653663-61654340 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:61657175-61657369 Neighboring gene small nucleolar RNA, H/ACA box 70B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11526 Neighboring gene MPRA-validated peak3715 silencer Neighboring gene Sharpr-MPRA regulatory region 6736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:61692432-61692952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:61692953-61693472 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:61694001-61694500 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11527 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11529 Neighboring gene MPRA-validated peak3716 silencer Neighboring gene MPRA-validated peak3717 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:61743599-61744099 Neighboring gene exportin 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15831 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15832 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15833 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:61766044-61766833 Neighboring gene proteasome 26S subunit, non-ATPase 12 pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:61809253-61809844 Neighboring gene ribosomal protein S29 pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185882.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016727
    Related
    ENST00000603652.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    61471096..61483941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    61476934..61490077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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