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LINC01596 long intergenic non-protein coding RNA 1596 [ Homo sapiens (human) ]

Gene ID: 105377617, updated on 8-Nov-2023

Summary

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Official Symbol
LINC01596provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1596provided by HGNC
Primary source
HGNC:HGNC:51591
See related
Ensembl:ENSG00000250666 AllianceGenome:HGNC:51591
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.0) See more
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Genomic context

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Location:
4q35.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (189881515..189884868)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (193246466..193249812)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (190802670..190806023)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene FRG1 divergent transcript Neighboring gene uncharacterized LOC124900882 Neighboring gene uncharacterized LOC105377619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:190749322-190749822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:190749823-190750323 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:190767193-190767906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:190767907-190768620 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190802184-190803383 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:190862333-190862832 Neighboring gene FSHD region gene 1 Neighboring gene MLLT10 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • TCONS_00007705

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132380.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF250324, BX094246
    Related
    ENST00000503609.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    189881515..189884868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187543.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    218541..221894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187650.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    219023..222371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187679.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    530244..533597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    193246466..193249812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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