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LINC02434 long intergenic non-protein coding RNA 2434 [ Homo sapiens (human) ]

Gene ID: 105377606, updated on 26-Oct-2023

Summary

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Official Symbol
LINC02434provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2434provided by HGNC
Primary source
HGNC:HGNC:53365
See related
Ensembl:ENSG00000248370 AllianceGenome:HGNC:53365
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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Location:
4q35.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (188160053..188161139)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (191507103..191508189)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986337 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:189047967-189049166 Neighboring gene RNA, U6 small nuclear 173, pseudogene Neighboring gene tripartite motif family like 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189080404-189081603 Neighboring gene uncharacterized LOC105377607 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76925 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:189117054-189117752 Neighboring gene ribosomal protein L7a pseudogene 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187420.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781

  2. NR_187421.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781
    Related
    ENST00000658544.1

  3. NR_187422.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781
    Related
    ENST00000663842.1

  4. NR_187423.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781
    Related
    ENST00000660255.1

  5. NR_187424.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781

  6. NR_187425.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781

  7. NR_187426.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781

  8. NR_187427.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138781
    Related
    ENST00000502419.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    188160053..188161139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    191507103..191508189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases