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LINC02509 long intergenic non-protein coding RNA 2509 [ Homo sapiens (human) ]

Gene ID: 105377556, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02509provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2509provided by HGNC
Primary source
HGNC:HGNC:53498
See related
Ensembl:ENSG00000250263 AllianceGenome:HGNC:53498
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q34.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (176875702..176880600)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180214698..180219602)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (177796856..177801754)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene cutaneous T cell lymphoma-associated antigen 1 pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:177613493-177614380 Neighboring gene HuR (ELAVL1) associated fibroblast migratory lncRNA Neighboring gene vascular endothelial growth factor C Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:178112608-178113209 Neighboring gene RN7SK pseudogene 136 Neighboring gene uncharacterized LOC105377557 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:178176457-178176976

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149104.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092673, AC105401
    Related
    ENST00000508790.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    176875702..176880600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    180214698..180219602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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