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SAP30-DT SAP30 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105377540, updated on 10-Oct-2023

Summary

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Official Symbol
SAP30-DTprovided by HGNC
Official Full Name
SAP30 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54424
See related
Ensembl:ENSG00000272870 AllianceGenome:HGNC:54424
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIRE
Expression
Ubiquitous expression in ovary (RPKM 1.9), testis (RPKM 1.5) and 25 other tissues See more
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Genomic context

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Location:
4q34.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (173349231..173370698, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (176688654..176710098, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 Neighboring gene uncharacterized LOC124900812 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:174196465-174196667 Neighboring gene microRNA 548t Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:174227831-174228613 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:174228614-174229395 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15808 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15809 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:174255709-174256444 Neighboring gene high mobility group box 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22158 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15812 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:174292649-174293212 Neighboring gene uncharacterized LOC112268474 Neighboring gene Sin3A associated protein 30 Neighboring gene stimulator of chondrogenesis 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The lncRNA ENST00000608794 acts as a competing endogenous RNA to regulate PDK4 expression by sponging miR-15b-5p in dexamethasone induced steatosis. Liu F, et al. Biochim Biophys Acta Mol Cell Biol Lipids, 2019 Oct. PMID 31330194

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. c-Myc-induced long noncoding RNA MIRE cooperates with hnRNPK to stabilize ELF2 mRNA and promotes clear cell renal cell carcinogenesis.
    Title: c-Myc-induced long noncoding RNA MIRE cooperates with hnRNPK to stabilize ELF2 mRNA and promotes clear cell renal cell carcinogenesis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • c-Myc-induced regulator of ELF2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534
    Related
    ENST00000609153.2

  2. NR_183969.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534

  3. NR_183970.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534

  4. NR_183971.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534

  5. NR_183972.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534
    Related
    ENST00000666010.3

  6. NR_183973.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534

  7. NR_183974.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097534

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    173349231..173370698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    176688654..176710098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases