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LOC105377488 uncharacterized LOC105377488 [ Homo sapiens (human) ]

Gene ID: 105377488, updated on 10-Oct-2023

Summary

Gene symbol
LOC105377488
Gene description
uncharacterized LOC105377488
See related
Ensembl:ENSG00000249184
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
4q31.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (151799359..151833097)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (155122455..155156198)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene FHF complex subunit HOOK interacting protein 1A Neighboring gene RN7SK pseudogene 35 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152567291-152567852 Neighboring gene uncharacterized LOC107986197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:152593699-152594498 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:152608614-152609114 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:152609115-152609615 Neighboring gene glutamyl-tRNA amidotransferase subunit B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22022 Neighboring gene LOC105377488-LOC127898556 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152732461-152732962 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:152795151-152795762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22023 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22024 Neighboring gene uncharacterized LOC102724700 Neighboring gene uncharacterized LOC127898556

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183034.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107074, AC112242
    Related
    ENST00000670924.1
  2. NR_183035.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107074, AC112242
    Related
    ENST00000659253.1
  3. NR_183036.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107074, AC112242
    Related
    ENST00000663327.1
  4. NR_183037.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107074, AC112242
    Related
    ENST00000657686.1
  5. NR_183038.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107074, AC112242
    Related
    ENST00000653329.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    151799359..151833097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    155122455..155156198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)