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FHIP1A-DT FHIP1A divergent transcript [ Homo sapiens (human) ]

Gene ID: 105377486, updated on 10-Oct-2023

Summary

Official Symbol
FHIP1A-DTprovided by HGNC
Official Full Name
FHIP1A divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53123
See related
AllianceGenome:HGNC:53123
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM160A1-DT
Expression
Broad expression in thyroid (RPKM 1.0), skin (RPKM 0.7) and 19 other tissues See more
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Genomic context

See FHIP1A-DT in Genome Data Viewer
Location:
4q31.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (151401076..151408892, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (154724930..154732747, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene SH3 domain containing 19 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:152236121-152237320 Neighboring gene RNA, U6 small nuclear 1282, pseudogene Neighboring gene serine protease 48 Neighboring gene Sharpr-MPRA regulatory region 2958 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:152312507-152313010 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr4:152328899-152329598 and GRCh37_chr4:152329599-152330298 Neighboring gene FHF complex subunit HOOK interacting protein 1A Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:152405719-152406374 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:152405062-152405718 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:152406474-152407173 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:152407174-152407872 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:152409975-152410608 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152445639-152446203 Neighboring gene RN7SK pseudogene 35 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152567291-152567852 Neighboring gene uncharacterized LOC107986197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:152593699-152594498 Neighboring gene glutamyl-tRNA amidotransferase subunit B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183955.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  2. NR_183956.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  3. NR_183957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  4. NR_183958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  5. NR_183959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  6. NR_183960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  7. NR_183962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795
  8. NR_183963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079795

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    151401076..151408892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    154724930..154732747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)