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LOC105377380 uncharacterized LOC105377380 [ Homo sapiens (human) ]

Gene ID: 105377380, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105377380
Gene description
uncharacterized LOC105377380
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377380 in Genome Data Viewer
Location:
4q26
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (114546911..114558726, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (117849957..117861771, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377378 Neighboring gene uncharacterized LOC105377379 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:115415345-115415970 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:115416597-115417222 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:115417223-115417847 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:115434688-115434933 Neighboring gene NANOG hESC enhancer GRCh37_chr4:115462958-115463459 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:115483127-115483970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21840 Neighboring gene UDP glycosyltransferase 8 Neighboring gene microRNA 577 Neighboring gene CIR1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    114546911..114558726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939093.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    117849957..117861771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074913.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials