U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02562 long intergenic non-protein coding RNA 2562 [ Homo sapiens (human) ]

Gene ID: 105377283, updated on 10-Oct-2023

Summary

Official Symbol
LINC02562provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2562provided by HGNC
Primary source
HGNC:HGNC:53602
See related
AllianceGenome:HGNC:53602
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
4q13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (75081925..75084708, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (78422064..78424847, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (76007135..76009918, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene PARM1 antisense RNA 1 Neighboring gene prostate androgen-regulated mucin-like protein 1 Neighboring gene NANOG hESC enhancer GRCh37_chr4:75916580-75917081 Neighboring gene NANOG hESC enhancer GRCh37_chr4:75951718-75952258 Neighboring gene uncharacterized LOC107986289 Neighboring gene Sharpr-MPRA regulatory region 9565 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76052289-76052985 Neighboring gene uncharacterized LOC100506253 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:76106257-76106757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76201500-76202127 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:76238240-76239439 Neighboring gene NANOG hESC enhancer GRCh37_chr4:76254685-76255186 Neighboring gene long intergenic non-protein coding RNA 2483

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149051.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC110760

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    75081925..75084708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    78422064..78424847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)