U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02496 long intergenic non-protein coding RNA 2496 [ Homo sapiens (human) ]

Gene ID: 105377248, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02496provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2496provided by HGNC
Primary source
HGNC:HGNC:53480
See related
Ensembl:ENSG00000249066 AllianceGenome:HGNC:53480
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02496 in Genome Data Viewer
Location:
4q13.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (60750567..60796100)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (64191126..64236667)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:59925530-59926052 Neighboring gene long intergenic non-protein coding RNA 2619 Neighboring gene long intergenic non-protein coding RNA 2429 Neighboring gene NANOG hESC enhancer GRCh37_chr4:60024914-60025415 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:60384297-60384518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:60721283-60721784 Neighboring gene RNA, U6 small nuclear 1325, pseudogene Neighboring gene Sharpr-MPRA regulatory region 1726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:61288221-61288721 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:61348812-61349396 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:61589695-61590894 Neighboring gene protein phosphatase 2 regulatory subunit B, gamma pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:61702564-61703334 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:61799272-61800471 Neighboring gene microRNA 548ag-1 Neighboring gene Sharpr-MPRA regulatory region 1933 Neighboring gene long intergenic non-protein coding RNA 2271

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183857.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105420
    Related
    ENST00000655846.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    60750567..60796100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    64191126..64236667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases