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LINC02619 long intergenic non-protein coding RNA 2619 [ Homo sapiens (human) ]

Gene ID: 105377245, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02619provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2619provided by HGNC
Primary source
HGNC:HGNC:54094
See related
Ensembl:ENSG00000249382 AllianceGenome:HGNC:54094
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.0) See more
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Genomic context

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Location:
4q13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (58987187..58988154, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (62436997..62437964, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (59852905..59853872, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377672 Neighboring gene uncharacterized LOC105377246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:59925530-59926052 Neighboring gene long intergenic non-protein coding RNA 2429 Neighboring gene NANOG hESC enhancer GRCh37_chr4:60024914-60025415 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:60384297-60384518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:60721283-60721784 Neighboring gene RNA, U6 small nuclear 1325, pseudogene Neighboring gene Sharpr-MPRA regulatory region 1726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:61288221-61288721 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:61348812-61349396 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:61589695-61590894 Neighboring gene protein phosphatase 2 regulatory subunit B, gamma pseudogene Neighboring gene long intergenic non-protein coding RNA 2496

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133939.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI208617, BQ429854, BX095557
    Related
    ENST00000512911.3

  2. NR_133940.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI208617, BQ429854, BX095557
    Related
    ENST00000514707.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    58987187..58988154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159995.1 Reference GRCh38.p14 PATCHES

    Range
    180263..275322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069129.1 RNA Sequence

  2. XR_007069130.1 RNA Sequence

  3. XR_007069128.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    62436997..62437964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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