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LOC105376996 uncharacterized LOC105376996 [ Homo sapiens (human) ]

Gene ID: 105376996, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376996
Gene description
uncharacterized LOC105376996
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376996 in Genome Data Viewer
Location:
20q13.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (63125280..63130276, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64928324..64933320, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13146 Neighboring gene highly accelerated region 1B Neighboring gene highly accelerated region 1A Neighboring gene uncharacterized LOC105372719 Neighboring gene MPRA-validated peak4307 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61751164-61751347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61753175-61753676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61762333-61763086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61772551-61773374 Neighboring gene uncharacterized LOC124904952 Neighboring gene MPRA-validated peak4310 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61799372-61800146 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61803896-61804472 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61804473-61805047 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61805624-61806198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61809099-61810059 Neighboring gene microRNA 124-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    63125280..63130276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754707.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64928324..64933320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089515.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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