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LOC105376988 uncharacterized LOC105376988 [ Homo sapiens (human) ]

Gene ID: 105376988, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376988
Gene description
uncharacterized LOC105376988
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376988 in Genome Data Viewer
Location:
3p24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (21169078..21221564)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (21179506..21232005)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986068 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:21018406-21018977 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:21050999-21051706 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:21058595-21059794 Neighboring gene uncharacterized LOC105376987 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:21245759-21245949 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:21440269-21440769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21447352-21447855 Neighboring gene VENT homeobox pseudogene 7 Neighboring gene zinc finger protein 385D Neighboring gene NANOG hESC enhancer GRCh37_chr3:21558661-21559162 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21584849-21585429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:21589175-21589999 Neighboring gene ZNF385D antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    21169078..21221564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940646.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    21179506..21232005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073373.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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