U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105376944 uncharacterized LOC105376944 [ Homo sapiens (human) ]

Gene ID: 105376944, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105376944
Gene description
uncharacterized LOC105376944
See related
Ensembl:ENSG00000189229
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105376944 in Genome Data Viewer
Location:
3p26.1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (6490442..6736739)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (6485700..6727327)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (6532129..6778426)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:6325607-6326107 Neighboring gene uncharacterized LOC124909341 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:6531900-6533099 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70950 Neighboring gene MPRA-validated peak4528 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19389 Neighboring gene GRM7 antisense RNA 3 Neighboring gene YWHAQ pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6810923-6811530 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6811531-6812137 Neighboring gene uncharacterized LOC105376943 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Speek M. Mol Cell Biol, 2001 Mar. PMID 11238933, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

Go to the top of the page Help

Clone Names

  • AC069277.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188693.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277
    Related
    ENST00000689328.1

  2. NR_188694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277
    Related
    ENST00000655754.1

  3. NR_188695.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  4. NR_188696.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  5. NR_188697.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  6. NR_188698.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  7. NR_188699.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  8. NR_188700.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  9. NR_188701.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277
    Related
    ENST00000671370.1

  10. NR_188702.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  11. NR_188703.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277
    Related
    ENST00000668643.1

  12. NR_188704.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  13. NR_188705.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  14. NR_188706.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  15. NR_188707.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277
    Related
    ENST00000669798.1

  16. NR_188708.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  17. NR_188709.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  18. NR_188710.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

  19. NR_188711.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024162, AC069277

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    6490442..6736739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    6485700..6727327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials