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LOC105376917 uncharacterized LOC105376917 [ Homo sapiens (human) ]

Gene ID: 105376917, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105376917
Gene description
uncharacterized LOC105376917
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in ovary (RPKM 1.4), testis (RPKM 0.4) and 5 other tissues See more
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Genomic context

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See LOC105376917 in Genome Data Viewer
Location:
19p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (22456092..22532485, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (22594707..22671103, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (22638894..22715287, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 98 Neighboring gene BCL2 interacting protein 3 pseudogene 32 Neighboring gene BCL2 interacting protein 3 pseudogene 33 Neighboring gene zinc finger protein 209, pseudogene Neighboring gene vomeronasal 1 receptor 86 pseudogene Neighboring gene uncharacterized LOC101929124 Neighboring gene long intergenic non-protein coding RNA 1233 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:22723129-22723674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:22723675-22724220 Neighboring gene RNA, U6 small nuclear 1179, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Potential readthrough

Included gene: ZNF98

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160727.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011467, AC025811

  2. NR_160728.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011467, AC025811

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    22456092..22532485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    22594707..22671103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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